Fix deploy_agent.sh — stdin consumption in loop, base64 script delivery via su

scripts/deploy_agent.sh

@@ -366,6 +366,12 @@ fi
 
 log_section "Processing Linux hosts"
 
+# Write host list to temp file to prevent ssh/sshpass from consuming
+# the while loop's stdin (classic bash gotcha with network commands in loops)
+LINUX_HOSTS_FILE=$(mktemp)
+echo "$LINUX_HOSTS" > "$LINUX_HOSTS_FILE"
+trap 'rm -f "$LINUX_HOSTS_FILE"' EXIT
+
 while IFS='|' read -r HOSTNAME HOST_IP; do
   [[ -z "$HOSTNAME" ]] && continue
   ((HOSTS_TOTAL++)) || true
@@ -379,16 +385,16 @@ while IFS='|' read -r HOSTNAME HOST_IP; do
     continue
   fi
 
-  # Add host to known_hosts
+  # Add host to known_hosts — redirect stdin from /dev/null to prevent draining loop fd
   log_info "Scanning host key..."
-  ssh-keyscan -T 10 "$HOST_IP" >> /root/.ssh/known_hosts 2>/dev/null || true
+  ssh-keyscan -T 10 "$HOST_IP" >> /root/.ssh/known_hosts 2>/dev/null < /dev/null || true
 
   # Test native user SSH access
   log_info "Testing SSH as $NATIVE_USER..."
   if ! sshpass -p "$NATIVE_PASS" ssh -o StrictHostKeyChecking=no \
       -o ConnectTimeout=10 \
       -o PasswordAuthentication=yes \
-      "$NATIVE_USER@$HOST_IP" "echo connected" &>/dev/null; then
+      "$NATIVE_USER@$HOST_IP" "echo connected" < /dev/null &>/dev/null; then
     log_error "Cannot SSH to $HOSTNAME ($HOST_IP) as $NATIVE_USER — skipping"
     FAILED_HOSTS+=("$HOSTNAME ($HOST_IP) — SSH connection failed")
     ((HOSTS_FAILED++)) || true
@@ -403,6 +409,10 @@ while IFS='|' read -r HOSTNAME HOST_IP; do
     "$AGENT_USER" \
     "$SKIP_SSHD")
 
+  # Base64-encode the script so it can be passed cleanly through su - root -c
+  # su -c replaces stdin so 'bash -s' heredoc approach doesn't work
+  REMOTE_SCRIPT_B64=$(echo "$REMOTE_SCRIPT" | base64 -w 0)
+
   # Execute via su - on remote host
   log_info "Executing bootstrap via su - root..."
   BOOTSTRAP_OUTPUT=$(sshpass -p "$NATIVE_PASS" ssh \
@@ -410,7 +420,8 @@ while IFS='|' read -r HOSTNAME HOST_IP; do
     -o ConnectTimeout=10 \
     -o PasswordAuthentication=yes \
     "$NATIVE_USER@$HOST_IP" \
-    "echo '$ROOT_PASS' | su - root -c 'bash -s'" <<< "$REMOTE_SCRIPT" 2>&1) || {
+    "echo '$ROOT_PASS' | su - root -c 'echo $REMOTE_SCRIPT_B64 | base64 -d | bash'" \
+    < /dev/null 2>&1) || {
     log_error "Bootstrap script failed on $HOSTNAME"
     echo "$BOOTSTRAP_OUTPUT" | sed 's/^/    /'
     FAILED_HOSTS+=("$HOSTNAME ($HOST_IP) — bootstrap script failed")
@@ -429,7 +440,8 @@ while IFS='|' read -r HOSTNAME HOST_IP; do
         -o StrictHostKeyChecking=no \
         -o ConnectTimeout=10 \
         -o PasswordAuthentication=no \
-        "$AGENT_USER@$HOST_IP" "echo key-auth-ok" &>/dev/null; then
+        "$AGENT_USER@$HOST_IP" "echo key-auth-ok" \
+        < /dev/null &>/dev/null; then
       log_ok "Key-based login verified for $AGENT_USER"
     else
       log_warn "Key-based login test failed for $AGENT_USER — check manually"
@@ -441,7 +453,7 @@ while IFS='|' read -r HOSTNAME HOST_IP; do
   log_ok "Bootstrap complete: $HOSTNAME"
   ((HOSTS_OK++)) || true
 
-done <<< "$LINUX_HOSTS"
+done < "$LINUX_HOSTS_FILE"
 
 # ─── Summary ─────────────────────────────────────────────────────────────────
 echo ""
@@ -466,4 +478,3 @@ echo ""
 if [[ $HOSTS_FAILED -gt 0 ]]; then
   exit 1
 fi
-